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1. tskit tskit Public

   Population-scale Ancestral Recombination Graph (ARG) library

   Python 187 84

2. msprime msprime Public

   Simulate ARGs and genomic sequence data using population genetic models

   Python 217 93

3. tsinfer tsinfer Public

   Infer a tree sequence from genetic variation data.

   Python 64 18

4. tsdate tsdate Public

   Infer the age of ancestral nodes in a tree sequence.

   Python 27 12

5. tutorials tutorials Public

   A set of tutorials for msprime and tskit.

   Jupyter Notebook 21 19

6. tszip tszip Public

   Gzip-like compression for tskit tree sequences

   Python 6 7